7UO5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7UO5_002 | 1/B/96:102 | GNRA | homologous HL_1U9S_001 HL_07380.1 | |
| HL_7UO5_005 | 1/B/188:198 | No text annotation | ||
| HL_7UO5_006 | 1/B/211:216 | GNRA | homologous HL_1U9S_004 HL_34789.6 | |
| HL_7UO5_007 | 1/B/272:282 | No text annotation | ||
| HL_7UO5_008 | 1/B/313:318 | No text annotation | geometric HL_8B0X_090 HL_34789.6 | |
| HL_7UO5_009 | 1/B/342:346 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7UO5_001 | No text annotation | ||
| HL_7UO5_003 | No text annotation | ||
| HL_7UO5_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7UO5_001 | 1/B/21:23, 1/B/58:60 | Isolated non-canonical cWW pair | geometric IL_8GLP_278 IL_01003.6 | |
| IL_7UO5_004 | 1/B/68:70, 1/B/357:358 | No text annotation | ||
| IL_7UO5_005 | 1/B/78:87, 1/B/242:243 | No text annotation | ||
| IL_7UO5_006 | 1/B/107:108, 1/B/117:119 | Single bulged A | homologous IL_1U9S_001 IL_14190.4 | |
| IL_7UO5_009 | 1/B/203:204, 1/B/224:226 | Stack outside cWW | homologous IL_1U9S_008 IL_77710.2 | |
| IL_7UO5_010 | 1/B/208:209, 1/B/218:220 | No text annotation | ||
| IL_7UO5_012 | 1/B/253:271, 1/B/283:296 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7UO5_002 | Isolated non-canonical cWW pair | ||
| IL_7UO5_003 | No text annotation | ||
| IL_7UO5_013 | No text annotation | ||
| IL_7UO5_011 | No text annotation | ||
| IL_7UO5_007 | No text annotation | ||
| IL_7UO5_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7UO5_001 | 1/B/10:20, 1/B/61:67, 1/B/359:364 | No text annotation | ||
| J5_7UO5_001 | 1/B/74:75, 1/B/246:250, 1/B/299:306, 1/B/325:342, 1/B/346:353 | No text annotation | ||
| J6_7UO5_001 | 1/B/91:93, 1/B/105:107, 1/B/119:142, 1/B/176:184, 1/B/202:203, 1/B/226:238 | No text annotation | ||
| J6_7UO5_002 | 1/B/91:93, 1/B/105:107, 1/B/119:142, 1/B/176:184, 1/B/202:204, 1/B/224:238 | No text annotation |
Problematic loops
No problematic loops
Coloring options: